In-universe, it could go either way. On one hand, it would be a pretty amazing coincidence that a guy who more than a decade earlier signed a random memo would now be hailing Kirk's ship. On the other, perhaps Starfleet bigwigs don't rotate from position to position every two years, and Robert Comsol remains either Starfleet's supreme commander, or then the Cigarette-Smoking Man in exclusive charge of the dark Talosian secret.
Timo Saloniemi
Timo Saloniemi