- The (perhaps also unintentional) depiction of the Clone Wars as wholly contrived by greedy capitalists and nefarious Sith, without any legitimate grievances from the Separatists. This is in the process of being scrapped (yay!) through the addition of more details to the story.
I'd like to see the legitimate Separatists being the original driving force behind the war, with the capitalists and Sith jumping on the bandwagon in an opportunistic way. This feels like a much more natural way for the war to evolve, and doesn't require the good guys to be ridiculously oblivious or naive.
I always thought the original Seperatist movement was planets who got disgusted with the corruption in The Republic and got changed. They allowed Dooku (The Sith definitely played a major role in that corruption and galacit problems) and his commerce guild goons to hijack their cause.
For the average SW citizen, backstory on Dooku from various sources say that he left the Jedi Order after the events of TPM, becoming one of The Lost Twenty Jedi. He returned to his homeworld and claimed his birthright (his title as Count and his vast fortune). He then disappeared or laid low for eight years before reemerging on Raxus Prime. In a speech he blasted The Republic and Jedi for corruption and a decrease in morality across the galaxy.
Check out holonetnews.com (a website operated by LFL prior to the release of AOTC. It has long since been abandoned but it still stands).
- The lack of any reference to the morality of using clones as cannon fodder. As of the last episode, there are signs that this may be changing. My own favorite fanwank for addressing this problem is that the Republic isn't really a perfect analogy to our own society, because they don't have the concept that all sentient beings are equal.
We've seen clone-centered episodes and we had that one episode in the first season where a clone joined with the Seperatists because he didn't want to be a slave of The Republic.
But the lack of anyone expressing doubts over using the clones, especially the Jedi, is bizarre and puzzling. I've said this before but Anakin should be the one most concerned with it. He was a slave and that clones words about not being a slave should have had some effect on him. Anakin's issues with slavery haven't been addressed at all on this series and that's unfortunate. He should despise the fact that The Republic is aligned with slavers like The Hutts. Outside of his initial displeasure over learing the news, we've seen nothing yet and that is a giganitc missed opportunity so far.