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Well there is this line from the episode "The Gift"
JANEWAY: You'll have to spend a few hours each day regenerating in a Borg alcove until your human metabolism can function on it's own. We'll leave one operational.
Which implies that she wouldn't always have to use a regeneration alcove.
Who says she didn't regenerate? They could have given her a charging station in her apartment. They could pass off to her that the need for it was due to whatever "injury" she suffered that necessitated all her cybernetic augmentation.