I started a similar topic a while ago that didn't get any traction.
http://www.trekbbs.com/threads/1994-article-looking-back-to-the-future-of-star-wars.277938/ In 1994 Starlog ran an article about the future prequels based upon the clues dropped in the movies and novelizations for Episodes IV-VI. Here is a link to the entire article.
http://starwarz.com/starkiller/looking-back-to-the-future-of-star-wars/
Episode I - The Clone Wars.
Obi Wan Kenobi (possibly a template for clones or O.B.-1 is the designation of the initial clone), a brash, somewhat cocky risk taking young Jedi (
Was I any different when you taught me?) faces his first challenge as a rising soldier in service to Bail Organa and Alderran, eventually he'll reach the rank of general (
Years ago you served my father in the Clone Wars). Under this young general's command is a hot pilot named Anakin Skywalker. Perhaps Anakin starts out as
a navigator on a spice freighter before following Obi Wan off on some damn fool idealistic crusade. Meanwhile, Senator Palpatine begins a plan to use the crisis of the Clone Wars to secure for himself the presidency of the Republic. Through subterfuge and manipulation, Palpatine arranges for the attack and kidnapping of his chief political rivals Bail Organa, Mon Mothma and Padme Amidala (or Lady Arkady as the article calls her). Kenobi and Skywalker break away from the main conflict we see at the start to rescue Organa, Mothma and Amidala from their Mandiloran abductors (
ESB novelization describes Fett's armor as the armor worn by soldiers during the Clone Wars). After a climatic space battle, President-Elect Palpatine awards our heroes for rescuing the important senators. Anakin catches Palpatine's attention and Amidala's eye and a budding romance begins. It is never revealed to our heroes that Palpatine was the evil mastermind.
Episode II - The Seduction of Darth Vader.
Some time has passed since The Clone Wars and the Republic has withered under Palapatine's leadership. Corruption, bribery and terror have reduced the High Council to a devoted few. The Jedi, guardians of peace for 1,000 generations have been supplanted by Palpatine's Sith Lord's and elite guards. The movie opens in the middle of some epic battle being fought by Anakin Skywalker. These ongoing battles, secretly orchestrated by Palpatine, have revealed how under trained and ill-prepared Skywalker was under Kenobi. Skywalker, now married to Padme, is forced to leave her at home and departs on a mission before he can learn that she is pregnant with twins. Lured by the promise of fame and fortune, and forced to rely upon the Dark Side of the Force to compensate for his inadequate training, Skywalker is slowly seduced by Palpatine to the Dark Side. A rift forms between Kenobi and Skywalker over Skywalker's obsession to find the "Kiber Crystal," an object that will cause it's owner to become so powerful with the Force as to be nearly invincible. Kenobi is forced to take one final attempt to save his former apprentice from completely falling away. Their climatic light saber duel finishes the secnd movie with Anakin falling into the molten pit scarring and burning his body and soul.
Episode III - The Fall of the Republic
The evolution of the Galactic Republic into the First Galactic Empire is nearly complete. By means of the Kiber Crystal and with the aid of the Sith Lords, Palpatine heals Anakin Skywalker into the cyborg Darth Vader. Once restored, Palpatine uses Vader to hunt down the Jedi, exterminating them through treachery and deception. Kenobi escapes the purge and hides on Dagobah to consult with Yoda. It is concluded that Amidala and Skywalker's twins, Luke and Leia, must be rescued before they are discovered by Vader and Palpatine. Those children, Kenobi and Yoda know, are the only hope to some day stopping Palpatine and Vader. For their safety, it is decided the twins should be separated. Amidala takes Leia to live under the protection of Bail Organa on Alderran and Luke is taken to be raised by Kenobi's brother, Owen Lars (I don't like the idea of Lars being Kenobi's brother. I'd rather make Beru Anakin's sister. This keeps Uncle Owen and Aunt Beru related and explains the different last name. Besides, if Kenobi is a clone, he wouldn't have a brother).
Additional idea is that Tarkin should be introduced earlier. Perhaps he's another soldier under Kenobi's command in Episode I. Tarkin would be an important secondary character in all three episodes, developing a friendship with Anakin with both rising in the ranks - Tarkin officially through the military and Anakin personally by the side of Palpatine.
The special effects and over-use of CGI detracted some from the prequel's that were made. The best example is the opening of Episode III, RotS, where it seems like as many FX elements were thrown into that opening battle that could be fit with no rhyme, reason or even artistry. Plus, it seemed like we had to see newer and newer looking space craft. These episodes would have been great places to introduce bright, shiny new looking X-Wing and Y-Wing fighters in their glory, before we see them again aged 20 years in Episode IV.
You know, it's called "The Clone Wars." Obviously clones were involved somehow. Were they soldiers? Were they the enemy? Was the armor Boba Fett wore the armor of the clone soldiers? Did Kenobi and the Republic fight on the side of the clones to preserve the technolgy? Luke received a mechanical hand, not a cloned hand. Was cloning outlawed after the Clone Wars? Was cloning always illegal and that was the cause of the Clone Wars?
Someone else wrote a nice fan-script for Episode III after the release of AotC. This script featured Tarkin as a loyal soldier of the Republic and featured the Death Star laser as an operating weapon that caused the lava flows that burned Anakin.
http://starwarz.com/starkiller/the-republic-falls/