The quantum beacons? Not officially (at least nothing was mentioned in the dialogue), but it's possible. Those things were still part of the ship when the NX-01 encountered the Romulan minefield in season 2 and used them to detect the mines... so it wouldn't surprise me if Starfleet got the specs for those from Archer dating back to Season 1 ending or mid Season 2 and then integrated them into NX-01's main sensors with the Season 3 refit.
Its also possible Archer never shared the technology with Starfleet. Since he was convinced Daniels was from the future and in regards to temporal pollution that could occur (and as we saw in the episode he got the specs for those from Daniels when Archer and T'Pol were sifting through the database of the future, Archer was adamant to keep the info limited to the Suliban ship they were hunting for).
It's also possible that Daniels himself removed any and all traces of the technology from NX-01 and Starfleet as a whole the moment history restored itself at the conclusion of the Temporal Wars.
Plethora of options to consider.
But if the technology is there still, then its likely Danials figured it was supposed to remain in the past and Starfleet integrated it into its systems.