Janeway isn't perfect. In fact, it's her flaws that I find endearing.
She is too soft on her subordinates when they make mistakes. The biggest example of that has to be with the EMH after his betrayal of the ship and crew in "Flesh and Blood." She acquiesces quickly when the crew refuses to follow her orders to leave her behind in "Night." She does little more than chew out Tuvok after he bought the transporter device in "Prime Factors." She is just as easy on Chakotay in "Maneuvers" after he goes off on his own to deal with Seska.
She is also more than willing to do whatever is needed to help her crew. Look at what she lets B'Elanna do in "Barge of the Dead." She lets the EMH go back to Earth to help his "father" in "Lifeline," and then she lets him stay behind to find happiness in "Virtuoso" (and when he returns, she simply allows him to return). She doesn't do much to him when he alters his program with awful results in "Tinker, Tenor, Doctor, Spy" and "Darkling." She forgives Kim in "Nightengale" when he fails to investigate the crew of the alien ship more carefully, and she lets him get away with insubordination (basically) in "The Disease."
Really, there are only a few times when Janeway refuses to listen to advice. The biggest is, of course, "Equinox." Another is "The Void," when she refuses to let go of Federation ideals. She is more than willing to follow the advice of her subordinates in "The Alliance" with almost disastrous results. Ultimately, she is required to listen to advice, but not to follow it. She is the captain, after all.
To me, Janeway is more often too soft than too inflexible, and I find her human qualities very admirable. She is wonderful to her godson when he thinks he's stuck on the ship in "Q2" and touching in her relationships with Kes at all times. Her compassion to the Q who wants to commit suicide in "Death Wish" is especially insightful. I love the way she is so understanding with Tuvok's limitations in "Riddles," and her farewell to him in "The Year of Hell" is a real tear-jerker. She even softens, in that episode, when she finds the watch that she ordered Chakotay to recycle; the way she wears the watch from that day forward and the way she gazes at the first officer's chair as she faces her "last battle" is indicative of how much she cares for and misses him.
I think people tend to oversimplify Janeway, to her disservice. She is a maverick, an idealist, and, underneath all the bluster, a softie. Seven is lucky that she is the captain who adopted her. Chakotay would have spaced her without a second thought!
