Well, “still interested in her” suggests Chakotay had some ongoing campaign to win Janeway’s heart prior to “Resolutions” on Voyager, which there wasn’t. Other than a few admiring looks, there weren’t any overt indications of his interest in Janeway. They weren’t even on a first name basis until “Resolutions”! I think people forget that Janeway was engaged to Mark back home and she hung on to that (very openly to Chakotay in S1 Elogium) until… about another year in S4. (the reason is a spoiler, so this is all I’ll say) Other than some playful flirting, I don’t think Janeway ever seriously considered Chakotay in terms of a boyfriend or mate at all prior to being marooned with him. Yes, she was tactile with him, but also with other officers and crew members.
Anyway, so I thought “Resolutions” was a pretty good depiction of a woman realizing a guy has interest in her and she’s not sure what she thinks about it. Of course, there was their difference in approaching the challenge as well. She was driven to try to find the cure. He just wanted to make a comfortable home. To some extent that difference surfaces on the ship as well.
But there is no doubt that when they finally talk about it, that Chakotay touches her heart with his story, indicated by her offering to him her hand. Mulgrew even said in an appearance she made with Beltran (2013 Las Vegas on Youtube), “Remember that episode where we were falling in love on the planet?” So Janeway definitely began to consider him to some degree romantically from that point. To my mind, that wasn’t “the end of J/C”, it was the beginning.
“Coda” shows us that Chakotay still has strong feelings for Janeway. I would also like to point out that Janeway’s suggestion at the end, of going for a moonlight canoe ride on Lake George with champagne is a rather romantic setting for someone who “doesn’t share the same interest”… :-) Just sayin’…
There were some fans who speculated during the run of the show (at this point) that they could have been having a very discreet romantic relationship back on the ship. I’ll stop here, CM, and we can discuss further as you watch more episodes and the topic pops up again.