I agreed with everything you'd mentioned so far with this thread; your observations are spot on and I'd mentioned many of your points in previous threads through the years. Which is why I call her the G.O.A.T. because I found Captain Janeway to be a preposterous character; the premise appeared to have some major obstacles for her to struggle. The Maquis who should have resentment for her decision and a 1st officer who was suppose to have more experience than her.Seska was a Cardassian spy, she doesn't really count, considering she had no real loyalty to the Maquis. I will concede the point on Jonas, but he was willing to betray everyone, there should have been way more regular friction between Janeway and the various Maquis, those two crews coming together should have take longer and had far more growing pains.
Also by the time "Learning Curve" comes along, Torres has developed a cultish devotion to Janeway, essentially telling Dalby he had no right to question Captain Janeway. That comes off as unrealistic, that Torres would be that devoted to Janeway that quickly.
Her threatening to delete the Doctor was still way out of line and dangerous considering in that situation they would have needed a medical officer and frankly the Doctor was correct that Janeway was behaving irrationally in that situation. Picard never treated Data with that level of disrespect because he was an artificial being.
The difference is Picard's actions in that movie were clearly being presented as wrong in that movie, the writers rarely present Janeway's actions in a similar negative light.
In Scorpion, Janeway made an alliance with the Borg and what came of this alliance? Janeway helped the Borg win a war where they were the agressor and this led Species 8472 to decide that the Federation was a threat to them and they nearly declared war on the Federation. Janeway almost got the Federation involved in a war with a vastly superior force, that would have crippled the Federation and no one called her out on any of this. At least someone took Picard to task when he was behaving irrationally and we were supposed to be on Lilly's side when that happened. No one ever did the same with Janeway.
Perhaps I making an assumption here, but I do think the writers neutered potential conflicts and other characters, to make Janeway look better because she was the first major female captain. Maybe I am being unfair and the Maquis story and Chakotay as a character were watered down due to imcompetent scripting, but the episodes with Janeway as a Mary Sue and the crew's cultish devotion to her makes me think otherwise.
It seems like they took the easy path, rather then the hard path. Instead of having her slowly earn the crew's respect through various feats and acts of good will, it seemed like most the crew almost instantly fell in love with her, even if it didn't make sense for some of them to do so. The level of loyalty went beyond healthy respect to slavish devotion and it didn't ring true.
Voyager kool-aid drinkers continue to forget this Maquis assignment was her first as Captain; zero experience, so I would believe she would make some mistakes along this dangerous journey home, and would eventually make her a better CO in future outings because of those pitfalls. Hard to have an investment in the character when the chips are always in her favor, and shifting the goal posts whenever there could be an avenue of vulnerability, and internal character conflicts. I found Bujold's take on the character was what I wanted but it was obvious the showrunners didn't want that and never cared about the premise and never took it seriously. The result is a bland series and the lead was a major issue for its blandness.