Ummm.... given that the key test is 'two named female characters talk to each other about something other than a man', and that the central character of the series is male and effectively the key person in the other characters' lives, it's hardly surprising that Who doesn't come off well.
Except in RTD's time when it came off very well...
What?
With Moffatt, the Doctor had a very independent, strong, aggressive wife, and two a single spunky, strong, independent companions, only one of whom had a bit of a crush on him for a short while.
With RTD, he had, what, two dim-witted bimbos (okay, only one was dim-witted, but even though Martha was a doctor, she was still treated like she was, too) who were madly in love with the Doctor (three if you count Kylie Minogue), one of which was unrequited, and another one who was a loud-mouthed bitch of a woman who, not surprisingly, was also rather dim-witted.
How the hell was it better with RTD?