Tripp acted according to Starfleet doctrine in response to the Cogenitors response for asylum.
There was a doctrine?
Actually, it WAS Trip's fault.
He directly MEDDLED into the internal affairs of another species (a much more advanced, albeit peaceful one), even though he knew going out into space he might encounter alien beings who do NOT share humanity's point of view... and it resulted in a death of the Cogenitor (via suicide).
His actions led to its/her death.
Was it Trip's right to interfere? Nope. He went to see the Cogenitor in secret and taught it/her to read and write.
Other NX-01 crewmembers had the sense not to poke too deep into the cultural norms of other species (and Trip was already told its not something for him to worry about)... but Trip just couldn't resist himself.
He acted irresponsibly, and I think Archer may have been correct in not granting her the asylum.
Granting her the asylum could have created a massive problem with diplomatic relations (which I'm sorry DO take precedence in First Contact scenarios), and a potential tactical conflict (which quite frankly, the NX-01 wouldn't be able to survive).
If Charles lot in life was so awful that she chose to kill herself rather than endure it, then the culture that generated that choice is to blame.
Archer killed an entire sentient species on a philosophical whim without any instructions from his superiors. He wasn't going to bat an eye on one asylum seeker.
This is probably going to be an unpopular opinion considering some of the responses here, but:
I think Trip did Starfleet, Earth, and the later Federation a favor.
Sooner or later there would have been problems with their 'culture/society' treating an obviously sentient segment of their species the way they were treating them.
Whether you think what he did was right or wrong, I think it was better for the bigger picture for that issue to be forced right away like that.
Some of you have stated your opinions that they would have potentially started an armed conflict against Earth over such things. If there had been years or decades of Earth turning a blind eye to that before there was some 'incident' over it, that potential armed conflict would have been more-or-less guaranteed.
As-is, the end effect is that species and their civilization just decided to not have relations with Earth.
Meanwhile, since I don't think we've heard of that species and their civilization again after that, who's to say what effect that incident really had in the long term?
I find it plausble that within their civilization that there would be a segment of the population who believed differently, as Trip did, about their 'cogenitors' and how they were regarded/treated; since when do thinking beings all think exactly alike? No doubt that segment believing in 'cogenitor rights' would be a minority, but word of this incident with the humans on Enterprise would make its' way through their grapevine, stirring controversy and discussion about their 'cogenitors'.
Or, perhaps, even without Enterprise and Trips' actions, it was inevitable that there'd sooner or later be reforms in how these 'cogenitors' were treated.
There is no such thing as a universal standard. What works for the Vissians may not work for humanity. Doesn't give us the right to judge them.
Congratulations. You have just legitimized slavery and oppression. Would you like a Confederate flag to hang on your porch?
Better news: the Vissians were a friendly and affable species. When they heard about the Federation, they would undoubtedly have been interested in joining. And if the Federation charter prohibits caste discrimination, it's probably not very friendly to gender discrimination, either.
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