Again, context is important. Because whatever people might THINK those lines mean, they're being spoken by a man who is an explorer and a scientist and is, by his own words, not a military officer. The context in this case is "Starfleet" and the sentence "Starfleet is not a military organization"
Context, as you know, is everything. For example:
Mike: You alright?
Marcus: No I'm not alright, Mike. Three days of this shit. Got my nerves all rattled. <turns to him> My ass still hurts.
Mike: What?
Marcus: From what you did to it the other night.
Mike: Hey, I didn't mean to be that rough...
Marcus: <Sighs>
Mike: I mean, we got caught up in the moment, things got crazy... you know how I get.
Marucs: Yeah? When you popped me back there, I think you damaged some nerves. Now I... I c...
Mike: You can't what?
Marcus: I can't even get an erection, Mike... I tried takin viagra. I popped one, I popped two... started eaten em like skittles. Still flaccid.
Mike: Um... okay. Look, I'm comfortable talkin to you about what I did to your ass the other night. But you not gettin an erection? That's a real problem for me.
Marcus: I just figured I could talk with you...
Mike: Nah, it's okay. We're partners. We're a partnership. But we're a partnership with boundaries. We got a new rule. From now on, you can't say the word "flaccid" to me. This is our little "boundary box." We're gonna take the word "flaccid" and put it in there with my mom's titties, and your erection problem, and we gonna close this box and we gonna throw this bitch in the ocean. And the only way that you can get to this box is you gotta be motherfuckin' Jacques Cousteau.
Ask some random people if this is a conversation between
a) A pair of homosexuals
b) A pair of on-duty police officers
c) A pair of grown men in a video store
d) A pair of idiots with dangerous codependency issues
Just saying: context matters.