In order of importance, first, dropping the 'shroomatron (or peyote-izer.) Without this mechanical gateway to spirituality, Chakotay's Indian character, instead of a projection of a possible future Indian religion, broke down into a characterless, generic Indian.
Second, Seska being revealed as a Cardassian agent devalued his competence as a leader. When he plaintively asked whether anybody was working for him, drama wise, the answer was, pretty much, just Torres. Ir'a like cutting of a testicle. And Seska basically raping him of sperm (even if they undid it after Piller left,) cut off the other testicle.
Third, the notion of the Maquis as Assholes in Space. Scenes where Chakotay manhandles women (Torres in Extreme Risk or Seven in Human Error) are even worse than Chakotay manhandling his own men (Learning Curve, I think.) This is not leadership. Plus, the general dimwittedness of the Maquis concept meant that Chakotary didn't even had a different perspective to offer. War against the Cardassians was not an option.
The Captain makes the decisions, especially in the excessively militarized Berman/Piller/Taylor Star Trek. So when Janeway makes the decisions (which is to say, is the dramatic center of the show,) that doesn't make her castrating.
Having such a weak second meant that every time Chakotay offered opposition, it was weakened because Chakotay had nothing in his character plausibly motivating it. In pretty much every serious clash with Janeway, his mulish opposition was pretty much counsel to give up a course of action, without offering alternatives. Scorpion was the closest to Chakotary becoming a character making choices for comprehensible. It is no accident it was one of his finest hours.
Second, Seska being revealed as a Cardassian agent devalued his competence as a leader. When he plaintively asked whether anybody was working for him, drama wise, the answer was, pretty much, just Torres. Ir'a like cutting of a testicle. And Seska basically raping him of sperm (even if they undid it after Piller left,) cut off the other testicle.
Third, the notion of the Maquis as Assholes in Space. Scenes where Chakotay manhandles women (Torres in Extreme Risk or Seven in Human Error) are even worse than Chakotay manhandling his own men (Learning Curve, I think.) This is not leadership. Plus, the general dimwittedness of the Maquis concept meant that Chakotary didn't even had a different perspective to offer. War against the Cardassians was not an option.
The Captain makes the decisions, especially in the excessively militarized Berman/Piller/Taylor Star Trek. So when Janeway makes the decisions (which is to say, is the dramatic center of the show,) that doesn't make her castrating.
Having such a weak second meant that every time Chakotay offered opposition, it was weakened because Chakotay had nothing in his character plausibly motivating it. In pretty much every serious clash with Janeway, his mulish opposition was pretty much counsel to give up a course of action, without offering alternatives. Scorpion was the closest to Chakotary becoming a character making choices for comprehensible. It is no accident it was one of his finest hours.