LightningStorm said:
As for "monkeys"... The theory of evolution doesn't say anything about humans evolving from monkeys. But more of a primitive version of ourselves that more resembled that of current day apes. So let's be clear, primitive man is NOT an "ape", "monkey", "chimpanzee" or any other modern-day low-order primate.
All men are apes. Citizendium: Ape; Tolweb: Hominidae
Only some men are Monkees. Wikipedia: The Monkees
As for the transformation into salamanders, I can only assume that the Voyager crew was gobsmacked and "evolution" was their best guess to answer an impossible question. It wasn't evolution by any modern understanding. As we understand it, evolution occurs within populations, not individuals. The idea of an individual undergoing "accelerated evolution" is nonsensical. The genetic variation that makes evolution possible in sexually-reproducing species occurs in gametes, not somatic cells. That variation is selected by environmental pressures, and the normal environment that existed on Voyager was wholly inconducive to Tom's transitional state. (Didn't he breathe methane at one point?) The triggering event, the transwarp flight, isn't reasonably connected to the idea of evolution, either. The only possible explanation for Tom's transformation is magic. Some interdimensional being was annoyed that a mortal was flitting about in infinity so he transformed said mortal into a salamander as punishment.
This might seem like science-nerd nitpicking, especially on a show with warp drives, transporters, and right-handed neutrinos. And maybe it is. But it would've been nice if Trek had gotten their concept of evolution closer to the mark than, say, Mrs. Garrison and her retard frog squirrel. Especially since--and I don't fault the writers for not predicting this--evolution has become something of an international hot button thanks to the likes of the Discovery Institute, Harun Yahya, etc.