Orci is pretty much full of shit, so that "he's a canon character because he's in a canon Trek film" is a very likely possibility.
I bet in earlier drafts they wanted Khan though, and couldn't make the villain's motivation work as well, as a bad apple who just came from within Starfleet to begin with.
Because why bother rebooting a universe if you're just going to tell the same stories?
I wouldn't be surprised if that were the case. It's only when you start thinking about Khan that you realize he's hard to work into a movie from scratch. Too much explanation and setup needed, so you'd have to focus and simplify him so much, you'd end up with someone closer to Mitchell or Garth anyway.
Why do people want him to be Khan so badly?
Transporter mishap in a time/space displacement. He's all of them, Tuvix-style.
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