My interpretation of screen canon is that Enterprise is only in the past of nuTrek - the result of changes stemming from the events of Star Trek: First Contact. So there is no conflict in TOS shuttles not having armaments - they are from the untampered-with timeline.
Interesting theory, but I don't think that's the official interpretation. I believe we're meant to treat ENT as part of the old Prime timeline of TOS, TNG, DS9, and VOY.
The new movies are their own thing.
I dunno, I'm even a bit more extreme thinking that the Trekverse is much more fractured as individual universes/continuities per series
I mean, what's the official interpretation for Kirk's death? Did he die according to "Generations" twice by getting zapped into the Nexus and then falling to his death or did he live past Scotty's accident on the Jenolan in "Relics"? Which timeline is Voyager on given how many times they've come back from the future to alter their trip home? And which timeline was Enterprise on given all the Temporal shenanigans or was it just a badly written holodeck story crafted by Riker for his own entertainment?![]()
Meanwhile, another question: where did Kirk's Enterprise keep the other shuttles when they weren't on the hangar deck? Did we ever see both shuttles at the same time? And suppose an visiting dignitary arrives by his or her own shuttle? Are the Enterprise's shuttles somewhere else?
Given the dialogue there is a flight deck and a hangar deck. I did a mockup of that here (start at post 158):
http://www.trekbbs.com/showthread.php?t=119751&page=11
The shuttles would be parked below in the hangar deck. The ready launch one is the one they walk up to that gets lifted up on the elevator to the flight deck for launching.
^ Hmm. Interesting. Thanks.