I think your design effort is great. This ship size and approach is exactly which I prefer.
Deck 1 - Bridge
Deck 2 & 3 - primarily research labs
Decks 4, 5, & 6 - primarily crew quarters. no duty stations on these decks. Senior officers on Deck 5. Senior officers have single quarters with two rooms (and the bathroom). Junior officers share accommodations (2 per suite).
Deck 7 - center area is sickbay outer area are water tanks and bulk storage. Center of the deck is the top of the main computer.
Deck 8 - center of the deck is the bottom of the main computer, recreation area, main food preparation, ship's laundry, exotic entertainment center.
Decks 9 and 10 - primarily devoted to freight and cargo
Deck 11 - phaser controls
As you indicate in an earlier post, deck 2 or at least its center portion got cannibalized to lower the bridge. Originally (Cage), it was cabins, offices, lounge and maybe a round briefing room, but with the center reconstructed for TOS, only the outer rim of rooms may survive which may be too small for labs with the extreme curvature of the hull. Probably, something survived aft of the turbolift and around the sides. A good place for
restroom facilities (already existing?) to service the bridge plus increased
equipment/utilities spaces to support the new bridge and upper sensor functions. I also think the ship's recorder beacon is located there which can be ejected in an emergency (yellow hatch on hull behind turbolift).
Sickbay may need to be multiple facilities (like separate emergency room or normal surgical suites or doctor offices), or moved up to Deck 5 center if we are to believe
The Day Of The Dove when the Klingons controlled Deck 6 and part of Deck 7, but the wounded in the Enterprise crew were piling up in Sickbay. I can see one type of Sickbay on Deck 5 to be closer to the crew quarters to service their normal needs like physicals. Pump those pedals on the wall.
Deck heights are a fair choices: 8' in saucer and 10' in secondary hull.
Day of the Dove also gave an excellent corridor (Deck 6) ceiling close-up: ~8 feet and white, but there may be a small between deck spacing needed, or not, its your design.
We see that the walls are ~28 inches thick in which (besides men pulling doors open) most of the conduits and utilities run up and down (see
Charlie X disappearing wall), over door sills, through the crazy beams over the corridors and not between decks giving a small inbetween deck spacing (I'd assume the wooden board at ~6-7 inches for the unknown deck, based on
Charlie X.)
Others on this site have measured the taller sets at 16 feet for S1 Engine Room and its re-dressings, and 20 feet for S2 Engine Room. I also think in the secondary hull, some of the central areas and outer side areas are staggered or partial (as you indicate for Deck 10-11), especially at the very top and bottom of the hull. Same with front to back in the hull with matching ports and shuttlebay, etc. Large naval ships are notorious for staggered decks,
everywhere. Again, great job.