You remember that there were, like, three direct sequels to "Errand of Mercy," right? It was always "the treaty" this and "the treaty" that whenever the Klingons showed up. And "By Any Other Name" was swarming with call-backs to earlier episodes.More references to other starships experiencing system malfunctions, continuing the contemporary practice of carrying plot threads from previous episodes. None of this would have been seen during TOS.
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