What's done in comics isn't canon. And the fact that someone chose that medium to "explain" things shows that it wasn't a huge worry on their minds to begin with.
Canon is debatable, since the rules of the Kelvinverse are it's own thing. And the Kelvinverse is now dead, so it ultimately doesn't matter anymore.
While there was a gap, that had nothing to do with STD. The reason why the Kelvin movies are dead is because Paramount sucked at advertising them.
Most of the Kelvin-verse trailers were great. They only had one bad one, and it was countered with better ones when the marketing got heavier. STiD was advertised well. It's numbers show that a lot of people saw it. They just chose not to return for any future installments.