A separate post for assorted other ideas, so that the above one doesn't get an ugly "edited" tag and make people think I can't get my thoughts together on one typing session...
Kruge's bridge in ST3 was vastly different from the bridge in ST4, yet there's no indication (other than what we see) of a major modification being performed between the movies. It might be assumed, then, that Kruge commanded from some sort of a "battle bridge" within the aft hull, perhaps a command center usually dedicated to controlling the ground combat operations the ship would have been specializing in. I vaguely remember the old SciPubTech poster indeed showing a separate bridge like this within the forward half-dome of the aft hull. Perhaps it would be a good idea to do the same here, too?
In "A Matter of Honor", the means of transfer between decks wasn't 45-degree ship's ladders, but vertical ordinary ladders. Unless the liaison officer was deliberately giving Riker the difficult route, I think we might just as well believe in vertical ladders. And disbelieve in turbolifts, which make little sense in such a small vessel, and have never been shown to be a feature of any BoP in TNG or DS9, IIRC.
The choice of 110 meters for the ship's length can be made to fit most BoPs seen, although the one from ST3/4 may be smaller still; the ones in "Way of the Warrior" fleet action were really tiny, perhaps 50 m; and 200 m might be better for the
Rotarran and her ilk. In any case, I guess the varying crew sizes can easily be explained by varying missions, and the aft hull can be expected to be highly reconfigurable. Perhaps the oft-seen mess halls are permanent fixtures on the upper part of the secondary hull - or perhaps they are temporary, set up in the cargo areas as needed?
Timo Saloniemi