My primary objection are 1) humans as batteries, which is mercifully blurred over after the first movie.
Interesting, I thought that by the second film they clearly showcased Zion's practical application of geothermal energy (so deep underground) and the machines posession of drilling equipment to tap into geothermal energy if these ever wanted.
One could argue that Morpheus' battery analogy was a little piece of propaganda. The "Second Renaissance" animation film ("hand over your flesh") almost suggested to me that mankind was imprisoned as part of a punishment.
I think the "Second Renaissance" made it clear that appearances are deceiving. The whole premise that mankind would willingly darken the sky (to deprive the machines of solar energy) is rather hilarious, considering the suicidal side effects the inevitable "nuclear" winter would / did have on mankind (add to this that the machines never developped technology to clean up the darkened sky in several - ? - centuries).
2) the simultaneous existence of a deterministic Matrix and an antirationalist Oracle.
But wasn't the Oracle equally deterministic? She definitely inspired Morpheus to think in deterministic patterns when he constantly spoke about fate, destiny and that things happen for a reason.
Of course, and the Architect suggested that rather clearly, one of her duties as a control program was to provide the subjects with the illusion of choice. Ironically, Morpheus had been so taken with this concept that the first thing the Merovingian told him that this was wrong (however, the Merovingian was apparently jealous that the Oracle had qualities to influence and manipulate people far beyond his own "determininistic" abilities).
I can't help but to highlight the crucial scene in the Oracle's kitchen when she wants Neo to take notice of the "Know Thyself" plaque above her kitchen door. The man who truly knows himself will also know "why" he makes the decisions he does.
3) the way the movie offers a self-willed Neo who simply "chooses" to fight Smith to the death, or at least be interpreted as doing something so simple.
Well, I'm unable to understand the theories that claim that Neo could defeat Smith because he was connected to the Source in order to delete Smith. IIRC the other agents ("loyal" to the Matrix) were equally connected to the source but were assimilated by Smith with obvious ease.
By the end of REVOLUTIONS I felt we were looking at the ultimate metaphor: Agent Smith is Neo's evil alter ego but since evil is an inseparable part of each of us, we can't really defeat or eliminate it. So finally Neo does the right thing, he accepts it as it is but the re-unification process also kills him.
The existence of gay people only in the Inferno but not the Temple was also remarkably annoying.
IIRC I noticed one couple of female dancers in the Temple session that did not look like they had been looking for or lacking male dancing partners.
The Matrix ended with a man coming back to life to no reason other than the background music. There's no way to rate that movie very highly. Maybe it sounded as if I was damning with faint praise, but that wasn't the intention.
Thomas Anderson had to die before he could truly become "Neo".
IMHO it's a classic of story-telling and in particular the
Monomyth.
Just like Yoda told Luke Skywalker "You must unlearn" and shed your previously aquired prejudices and conceptions, the old self has to "die" first before you are truly ready to absorb new and different concepts. Again, IMHO, a metaphor which the Wachowskis illustrated literally and pretty darn good, I should add.
Bob