Janeway's handling of the whole situation was terrible in that story plus we get to see how nasty Tom becomes when he realizes that they are all copies, well the death of B'Lana definitely had a devastating impact on him.What was the point of this episode then?
For the writers to have some disposable fun (with Janeway in particular)
It's the very embodiment of a Voyager reset episode. They can literally do whatever they want and it won't matter. Have Janeway marry Neelix.....have Harry Kung fu kick Chakotay in the balls.....Seven just randomly explodes into glitter
All meaningless (and yet they still made Janeway a self-righteous nut case)