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Geordi: Thank you, sir. If that thing had managed to scan us, we never would have had any chance of saving the Enterprise.
(Act Three - Observation lounge)
Geordi: That probe was a transmitter sending an alien computer program. The same program that is currently aboard the Enterprise trying to rewrite our software in its own image. We have two completely incompatible computer systems trying to interact.
Data: Consider, Captain, this program has entered an alien database, ours, and in less than seven hours has managed to not only learn our systems, but has begun to reprogram our computer.
La Forge: The program affected all of the Yamato's systems simultaneously. But with us, it was deposited within a specific section of our mainframe, so it's having to work its way out of that location. That gives us a little breathing space.
La Forge: Captain, the Enterprise computer system is a lot like our own bodies, with voluntary and involuntary systems. Now probably 90% of what happens on this ship is done automatically. Completely out of our control. We're sitting on a bomb that could go off... any second. Or maybe never.
(As Picard takes this in, in sickbay, Dr. Pulaski is chewing out a poor medic over the ship's condition)
Pulaski: The biobeds aren't working? The ship is falling apart! I've had thirty-five emergency calls scattered across twelve decks. My trauma teams are being run ragged trying to respond. Biobeds!