Only if they try to integrate as much as possible even where some things otherwise wouldn't fit.They can keep telling stories in this universe, but technically this wasn't a reboot. We should still see certain things happen, like say V'Ger. While some other things should not happen, like any of the Next Generation crew being born.
I think the writers thought they were freeing themselves from the burden of continuity, but now they've made themselves an even worse kind of slave to it. They have to figure out how every character would be.
I'd be perfectly happy with something like BSG where some people are the opposite sex, for example. Or the Enterprise-D wouldn't have a Riker. Or the Bajorans would never have existed. Or shields don't exist. Or the Borg are pink. Well no, not that. But seriously: There have always been contradictions in canon. The Klingon's ridges is a big example. They've explained all sorts of strange reasons in order for it to still fit in canon. I say: screw it. Make them have tentacles, like D'Argo on Farscape:

