Well, if I was in charge of the new movies (never going to happen, but this is a sort of
what if question), I think that it would be proper to treat the stories of TOS in the same way that the Bond films have treated the short stories of Ian Fleming. That is to say, weave a few together to make a movie.
Basically run two smaller stories back to back as the background for another who's arc spans the entire movie.
And now that I've brought it up, I'd prefer that they did something like this with new stories. Trek was never meant for the big screen, and in that environment the best stories of Trek will never be told because those stories aren't
epic. But there is enough time in the span of two hours to have a number of character driven stories that could explore aspects of many of the crew members.
Of course the reason this will never happen is because Trek movies have become effects spectaculars, where we are about as lucky to get a compelling story (that isn't
captain saves the day) out of them as we are to get one out of any fireworks display on the
Forth of July. I'd like to see the big effects of all of Trek (including fan films) limited to about one minute out of every ten minutes of run time.
I've said it before and I think it stands to be repeated, the best Trek stories ever (in my opinion) would never have been told if Trek was only a movie series. Stories like
City on the Edge of Forever and
Inner Light wouldn't make it to the big screen because everyone sees Trek movies as a showcase for effects rather than a showcase for stories. And yet stories like
City on the Edge of Forever and
Inner Light make it to the big screen as successful movies all the time as standard character driven dramas.
Of course
The Doomsday Machine would be somewhat interesting... though the original planet killer wouldn't seem all that impressive being dwarfed by the new Enterprise.
The real problem with telling
The Doomsday Machine effectively is that that episode came after a full season of TOS where we saw the Enterprise survive all threats unscathed and the only starships to have been lost were years in the past. The Enterprise seemed almost invulnerable, so seeing the abused body of a ship just like her was shocking.
Today, that is a standard plot device and is expected. Heck, we just saw that happen to a ton of ships in this movie, so why would it matter if it happen to one ship (or a dozen) in a
Doomsday Machine movie?
But hey, this is just me, and I stopped attending fireworks displays years ago.