As does the obscenely fast warp drives in STXI...
Largely an illusion created by editing. There's a gap of several hours between going to warp and Chekov's briefing, as indicated by the fact that McCoy has changed into his uniform and Kirk awakes from his sedated slumber seemingly moments after he first passed out. But it's edited to give the impression of no passage of time for the sake of pacing.
And it's not like we haven't had arbitrarily fast warp drives in Trek before. "That Which Survives" had the
Enterprise covering over 1000 light-years in mere hours, though that's a year's travel by
Voyager standards. ST V had the center of the galaxy reachable in minutes instead of decades.
First Contact had the
Enterprise seemingly get from the Romulan Neutral Zone to Earth in minutes (though that could've also been an editing trick). And remember all the complaints about "Broken Bow" and NX-01 getting from Earth to Qo'noS in four days?
Warp drive works at the speed of plot. That's nothing new.
The TOS shuttlecraft interior set had a higher ceiling (and a larger aft compartment?) than the exterior mockup, and at one point in "The Galileo Seven" it seemed to have a rear exit corresponding to nothing visible on the exterior. The TMP rec room was too high to fit in the part of the saucer where it was supposed to be. The TMP engine room had a forced-perspective corridor appearing to lead much farther forward from engineering than would be physically possible without passing through the deflector dish and into open space. The Ten Forward set in TNG couldn't proportionally fit into the rim of the saucer of the original 6-foot miniature and its windows were too large, so they actually had to redesign the ship's proportions in the 4-foot miniature to make the saucer rim two decks thick and add accurate Ten Forward windows. The
Delta Flyer had a whole large aft compartment that couldn't possibly fit into the exterior of the ship, and the exterior didn't seem to have a door on it anywhere. Not to mention the mystery of how the
Flyer, Neelix's fair-sized cargo ship, and a fleet of shuttles fit into
Voyager's single shuttlebay, or where the mysterious "shuttlebay 2" was on a ship with only one hangar door. The E-A in ST V had a turboshaft over 100 decks high, and the lowest deck of the E-E in
Nemesis had a catwalk over a seemingly bottomless shaft.
All of this stuff was put in there for new audiences, and they'll just have to work around that.
Just as the old audiences have been working around the equivalent inconsistencies in Trek for the past 45 years.