One could view it like the interpretation Simon Pegg offers for the Kelvin movies not being obligated to match prime timeline works completely. While the 2009 Star Trek movie focused on a spacetime incursion from 2387 to 2233, the Kelvin timeline by its own nature can no longer include the latter-day portions of "Tomorrow Is Yesterday", "Assignment: Earth", Star Trek IV: The Voyage Home, "Past Tense", Star Trek: First Contact, "Future's End", etc. Therefore, reality adjusts such that the Kelvin timeline is also different before 2233 in various ways.
That doesn't follow. If the timeline splits into two coexisting branches, then there's no reason time travelers from either branch can't go back to the same single pre-split part of the timeline that they both have in common and thereby influence each other's futures. I mean, we have seen stories where events in one timeline were affected by the actions of characters from alternate branches, like Sela being the daughter of the alternate Tasha Yar. And the Kelvin and Prime timelines have always been meant to coexist, rather than Kelvin's creation "erasing" Prime (which is impossible anyway). So there's absolutely no reason why those past events involving Prime characters would have been changed.
Also, I hate that I keep having to point this out, but it wasn't Simon Pegg's idea. It was Michael and Denise Okuda who came up with it for the fourth edition of the Star Trek Encyclopedia, as an attempt to rationalize the slight inconsistencies between the Prime and Kelvin Timelines in things that would've predated the split, and to pre-emptively handwave any future movies that might make more major retroactive changes. Simon Pegg was the first to publicize the idea because he got an advance copy of the Encyclopedia, but he didn't come up with it. If anything, the Kelvin movie Pegg cowrote, Beyond, was the one that had the fewest inconsistencies with Prime, and thus ironically had the least need for the Okudas' handwave.