My theory, unwritten, was that in one of the refits the outer hull was removed and decks were added. Again, the easy route would be to not explain anything — but if you read the book you'll see the degree to which what was where on the ship, and what its capabilities were, was vital to the narrative. I'm a blueprints guy — if the shipboard parts aren't the Full Clancy, it's at least some distance towards it.
You'll also see Enterprise War makes the case that the Desperate Hours' events did happen, but that because of the characters' emotional baggage, the episode already feels distant and long ago to both the characters involved. We're aided in this in that people's words aren't always accurate reports of their own lives; a date shown on a computer screen or etched in marble on a statue is a little harder to rationalize away than a guesstimate from a speaker. (Though even that is doable!)
As to the final question, I'm usually briefed by licensors on tie-in projects as we go, but if I spot a new element that I might want to acknowledge and there's time, I will at least nod towards it, at least tangentially. Yeoman Colt is the case in point for that in Enterprise War. I suggest reading the book to see how I touched on these things.
Connecting dots is never the point of any of our stories, but sometimes unobtrusive things can be done that help the meta-narrative.
You'll also see Enterprise War makes the case that the Desperate Hours' events did happen, but that because of the characters' emotional baggage, the episode already feels distant and long ago to both the characters involved. We're aided in this in that people's words aren't always accurate reports of their own lives; a date shown on a computer screen or etched in marble on a statue is a little harder to rationalize away than a guesstimate from a speaker. (Though even that is doable!)
As to the final question, I'm usually briefed by licensors on tie-in projects as we go, but if I spot a new element that I might want to acknowledge and there's time, I will at least nod towards it, at least tangentially. Yeoman Colt is the case in point for that in Enterprise War. I suggest reading the book to see how I touched on these things.
Connecting dots is never the point of any of our stories, but sometimes unobtrusive things can be done that help the meta-narrative.