According to the codex, Indoctrination uses infrasound and EM manipulation of the brain, so it's highly likely that there's no easily detectable signs of indoctrination. Hell, Rana Theropis manages to go through two and a half games (IIRC) before being revealed as an indoctrinated agent. So it's possible that there is no way to detect indoctrinated agents, especially if they aren't directly involved in a project.Cart before the horse. Javik said the attack happened *because* they were betrayed by indoctrinated agents, not the other way around. The whole facility on Eden Prime was supposed to be a well kept secret. Indeed, how else could they ever hope to wait out the reaper invasion in stasis unless they were sure the facility was well hidden?
So like I said. Plot hole.
Except there *is* and it was directly inferred on two separate occasions by two separate prothean VI's.
Vigil says to Shepard on Ilos: "I do not sense the taint of indoctrination upon any of you, unlike the other that passed recently."
And then in ME3, just before Kai Leng shows up on Thessia, Vendetta says: "Indoctrinated presence detected. Activating security protocol."
QED.
In other news, it looks like the data miners have found more cut ME3 dialogue buried in the game's files. Interestingly enough, these ones are from Grunt, Jacob, Zaeed and Jack and sound as if they were supposed to be present and involved in the final mission in London. More evidence the ending was rushed and unfinished, no?
Also, someone noticed (and I've checked this for myself) that if you look at the game's file names, you can quite easily see that even Bioware labelled the endings by colour. The files for the various ending cutscenes are named "red, green and blue." Ouch.
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