OK, I can see your point here and I can actually agree with some of it too.
But consider the fact that we are discussing a show (or whatever we should call it if we refer to both TV episodes and books) where most of the characters stays basically the same. They are seriously wounded, possessed by aliens, turned into lizards but in the end are restored to normal. In that case, I don't find it logic to single out certain characters for "execution". It would have been different if it had been an ongoing saga stretching over hundreds of years, like some of those series which starts with the colonization of America and ends in present time.
But even if I see your point here, I must disagree in this case. I find the "annihilation" of Janeway unnecessary even from a storytelling point, I mean she isn't even on Voyager anymore so killing her off to give Chakotay or someone else more space or development isn't necessary either. As a matter of fact, it looks only like some stunt, like "OK, let's kill off Janeway, it will stir up some emotions, create some headlines on the Trek forums and by the way, she's not so popular either, many Trek fans hate her". Sorry, but that's the impression I got.
Besides that, I must once again mention my personal dislike of seeing favorite characters killed off. I don't want to rant about it but I've already had some problems with the concept for the relaunch where main characters (who I really like) are absent and replaced by characters who I simply can't come up with any affection for.
You might find it silly or narrow-minded but when I read a Voyager story, then I want to read about the Voyager characters from the TV-series. That's why I actually prefer the old books who were written during seasons 1-3 where the original main characters are all in the books and they are facing the unknown in the Delta Quadrant before the "relaunch" books. To put it simply, the magic from the old books isn't there anymore.
And still, one could at least imagine that the missing favorites were still around somewhere and hope that they would show up in some upcoming book in the future. With the "annihilation" of Janeway, that will not happen in upcoming books.
That's my opinion about this and as you see, I guess it differs from yours when it comes to what we want to see in the Star Trek books.
Just for fun, I would also like to present another view of the scene here. As we all know, the different Trek series are on re-run all over the world. So let us imagine that there is a "newbie" somewhere out there who starts watching Voyager, takes a liking to it and become a Janeway fan. Then that fans finds out that there are books about Voyager available. The fan buy one or some book and finds out that Janeway has been killed off and most of the characters from the series are missing. How interested in the books will that person be? (I bring this up because I read a comment from a person once who was complaining about why the books made on an European SF series were so different from the TV series itself due to the fact that the author had started to replace characters from the series with his own creations).
Lynx - We all "get" that you have affection for Janeway although not a completely loyal affection but affection none the less. Your reasoning is just trying to "keep the band together" but the fact is the band is no longer viable or any good. Sometimes it's necessary to break up the band so the individual members can explore their own potential. If Paul McCartney had never left the Beatles we never would have had Wings and all of his solo albums. Or George Harrison's All Things Must Past and the Traveling Willburys. John never would have written Imagine or Give Peace a Chance. And although the tragic killing of Lennon was awful yet life moved on. It did mean we would never see a Beatles reunion but you know what? If we had it would never have been the Beatles we remembered anyway. It just would have been nostalgia.
Your scenario could possibly happen but Pocket Books cannot release books for nostalgia's sake. Life takes nasty turns and we have to move on and grow with them. You for some reason want to live in the past. A past that was fun and one you have fond memories of but Trek books cannot afford to remain there. You can choose to live in the past if you want but if you do life will pass you by. There is so much of the Star Trek universe to still explore and new characters that, given a chance, you could come to love as much as you do Kes and Janeway. But you seem to be too narrow minded and the spirit of adventure and discovery is lost on you.
As much as I wish we could encourage you to move on I can see there is no hope for you as long as you are closed to new possibilities. You need to find some other show to attach your affections to but what will you do when they too kill off a beloved character? The other day you indicated you liked NCIS but was not so bothered by Jenny's death because YOU considered her not a main character. So you decide who is worth saving and who is NOT? The first season of NCIS in the last episode they killed off my, and many other fans, favorite character, Kate! Did I stop watching NCIS because of it it? Heck no! Ziva has never been and never will be a replacement for Kate. I have come to like Ziva over time but I would much rather have had Kate. I still have not abandoned the show because there are still story possibilities and now killing off Jenny the new director has made things even more interesting. It may turn out that the Voyager stories will prove to be far better without Janeway. Only time will tell. Personally I don't think there was a lot you could do with her character without being contriving and the cameo Admiral janeway bits were getting obnoxious. She just is not a very interesting character as an Admiral, nor even as a captain for that matter, but that's my personal opinion.
Either accept what is or move on Lynx because you are just wasting your time complaining about what is and cannot or won't be changed. It seems by responses that you are in a very small minority and for every fan that stops buying books because Janeway was killed there very well could be many more who will now start buying them.
Kevin