"If Laura Roslin is a Cylon, we're all frakked."
Chakotay in charge of the night shift, releases the sihips neurozine gas counter measures while transporter suppressing the 90 of so crew he didn't want to try and turn to his side.
220 Investigations. D-Day.
219 LIfe Signs. Sell the crew out to the Vidiians.
218 Deathwish. Seize command of the ship. Murdering Janeway seems like a good idea. Then accept Q's deal to go home in exchange for Quinn. Pick up Seska on the way home.
217. Dreadnaught. On eggshells. But after the day is saved, when Janeway is getting the key to the planet and half the crew is on Shore leave, that's when he takes Voyager and hooks up with Seska.
216. Meld. The security Chief was insane and the Captain was by his bedside. This would have been the perfect point to assert himself.
215. Threshold. The Captain was kidnapped and gone. Never to return. Club the Vulcan in the back of his kid and then it's just a matter of outwitting Kim.
214. Alliances. This is where Janeway decided to ally herself with Seska and become gal pals again. Paint each others toe nails and shit. If the Trabe hadn't been such dicks, Janeway and Seska would have been equal parters. And once they told the Trabe to bugger off, there was absolutely no reason why Janeway couldn't have honoured her arrangement with the other persons trying to make a new Federation in the Delta Quadrant.
...
UM.
Which episodes did this arc surface... Well
Rapjael Sbarge is credited with being in 5 of of the 7 stories above. This is why Q is a ####. He knew that Jonas was working against Janeway, and he knew that Paris was pretending to be a #### to Chakotay yet he let it all play out... And Rapjael was not in Meld either. Seriously! When Lon Suder killed that guy, they must have thought "Victory is mine! We found the traitor sending gossip back to Seska." But I suppose Tuvok ransacking his brain put the kibosh on that thinking.
If Jonas sent the Kazon all the technical information Voyager had about Transwarp... And they got it working, then the Kazon could have easily been waiting in Earth orbit for Janeway in Endgame to blast her good.
"Sigh"
They thought he was a shitty actor. That's it. No grand conspiracy.