For one thing, those alternative universes have never replaced the primary one before... The writers never even threatened to do that. Also the whole point of such places existing was to provide massive contrast... A running commentary if you will, on what characters would become on a path not taken, and in places where histories are screwed up. There's some of that in JJ Abrams' Star Trek, but it's clearly a means to an end, discard anything inconvienent about that crew's past lives apart (Kirk receiving the worst revision thanks to Nero), and then explain away the not-so radical alterations as "time healing itself". What's the betting a sequel tells a stand-alone story capable of being told in either universe?And what's wrong with the Abramsverse? It's no less canonical than any other alternate reality we've seen in Trek.
There's also an element of bitterness here for sure. If you didn't like Mirror Universe stories, or parallel timelines... fans had the comfort blanket of knowing the Star Trek they knew and loved would be back next week, or next season or the next film, with ongoing developments onscreen. In my case, that would be ENT on the road to the Romulan War & Birth of the Federation and beyond to TOS. Say "In Mirror, Darkly" became the norm in the weeks that followed those episodes, the series just switched universes and that after becoming invested in the direction of Season 4 beforehand? Now expand that view, to someone who appreciated the lengths to which producers/writers went in order to keep the Prime Universe largely consistant throughout modern Trek? JJ Abrams' film throws a massive spanner in the works, insisting that you have no such right to value continuity.
I guess the film committed an unforgivable crime in my eyes, not living up to my expectations for a traditional prequel (while marketing itself as such for beginners... here's how Kirk, Spock and McCoy met etc? If you think about it, thanks to Nero... we still haven't seen that film!) I admit to liking the updated look of the 23rd Century and the care taken to recast the actors for younger versions. Those last two aspects being the only decisions I thought were handled very well indeed.
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