What exactly was the problem with Janeway wanting to turn the Equinox crew over to the aliens to be executed? Starfleet policy has always been that officers who violate alien law on alien turf are subject alien punishments, up to and including death for far lesser offenses than deliberate mass murder. And this wasn't Wesley Crusher tripping and falling into a flowerbed; these were adult Starfleet officers who absolutely knew better deliberately murdering large numbers of sentient beings not for their own survival, but merely to make their engines go faster.
In Random Thoughts, Janeway was willing to allow B'Elanna to be lobotomized for thinking a violent thought, in a situation that wasn't at all B'Elanna's fault. (If they'd known about that particular law, I doubt they'd have sent her down. They apparently didn't know about it, and figuring this stuff out beforehand isn't the chief engineer's job.) No one was happy about that, but no one questioned Janeway's fitness for command over it, either.
Sure, Janeway got more emotionally involved than she should have, and confining Chakotay to quarters was probably overkill. But why was her fundamental position so wrong?
In Random Thoughts, Janeway was willing to allow B'Elanna to be lobotomized for thinking a violent thought, in a situation that wasn't at all B'Elanna's fault. (If they'd known about that particular law, I doubt they'd have sent her down. They apparently didn't know about it, and figuring this stuff out beforehand isn't the chief engineer's job.) No one was happy about that, but no one questioned Janeway's fitness for command over it, either.
Sure, Janeway got more emotionally involved than she should have, and confining Chakotay to quarters was probably overkill. But why was her fundamental position so wrong?