So, your issue is not with the overall story, but an unprecise labeling of the story. Got it.
By your logic Civil War should be labeled Captain America and Iron Man have a disagreement, where Iron Man is slightly in the wrong.
How do you cope with stories that don’t label the main character at all?
have you considered that Andor might not be the main character, but the catalyst for the events of the story?
Great points, except Iron Man was correct.
The finer points of that movie never made sense to me. As a (former?) military officer, Captain America's points were basically, "hey, it's fine to ignore the chain of command and go rogue whenever you want!" while the (formerly?) iconoclastic Tony Stark was advocating for oversight.
Strange take for the characters, but at least Stark's position demonstrated character growth and wasn't chosen at random just to provide conflict.