There are some aspects of SGU I wouldn't have done - things like the "Eli's a Kino-wielding Pervert" and the "Lt. Hugeboobs Can't Find a Man" sub-plots - but overall I've enjoyed it much more than most other recent shows.
The show has tried to make the distinctly untrustworthy military characters the "heroes" of the show while painting civilians like Rush and Wray as villains a bit too much too. One wonders how much O'Neill knows about what's really going on on Destiny and whether or not he'd be so eager to support Young if he found out that his people were using threats and violence against the civilians.
I lost count of how many times O'Neill threatened to "shoot" a civilian or scientist off world for behaving like a jackass or putting their team in danger, or not following orders. I know he wasn't
really going to shoot anyone in cold blood, but I think he has an appreciation for the military chain of command and sympathy for the situation they're in.
And quite frankly, some of those civilians
deserved to be threatened, they think it's some kind of game or pissing contest. They'd probably all be dead now if Camille Wray had been in total control since day one.
I think it's funny that some people are defining Eli as a "whiny emo hipster" kid. I don't think they know what an "EMO hipster" actually is, but it sounds good and it's insulting so they run with it.
Stargate SG-1 and Atlantis did things a certain way that pissed off a lot of people. So the producers went in a different direction, corrected a lot of those errors (IMO), and now there are a different (some the same) set of people complaining about other shit. If you like the show, watch it, and don't worry what a bunch of people who don't like the show think about it.
It's the lack of development of that trust that's really the problem, especially after stuff like Pain and Subversion, where neither Young nor Greer bother to question the others judgment. It's stuff like that that makes the viewer question things and not in a good way.
Yes, because if there is one thing the military is known for, it's questioning every order and non-coms building trusting relationships with their superior officers before they are willing to accept orders.
Greer has a chip on his shoulder, but he's a soldier with what seems to be unwavering loyalty to the uniform. Granted, that's the kind of single-mindedness that leads soldiers to commit war crimes, but it's far from unrealistic. If the viewer "questions that", they're not familiar with the way the military operates. Just because everyone on BSG was drunk and ready to punch out their immediate superior doesn't mean that's "realistic". There are
plenty of people questioning Young's orders, it would be silly to think he wouldn't have supporters. In fact, if he didn't, it would be unrealistic to think he'd still even be in command.