When people beam into a small, enclosed chamber, the sudden displacement of air should increase the pressure and make their ears pop, like on an airplane.
For anyone interested...
Sci-fi writer Steven Gould wrote a series of novels exploring some of these topics (
Jumper, Reflex, Impulse and
Exo). By the way, the movie
Jumper bears less in common (meaning virtually nothing) with the book than the James Bond movies and novels.
The first novel introduces Davy, a 17-year-old boy, who discovers that he has the ability to teleport at will. While his talent is very real, it is also allegorical for the character's response to life—keeping everyone at arm's length and "jumping away" whenever reality becomes too uncomfortable. Among the first things Davy discovers is his ability to dump or acquire "momentum," such as jumping from a high northern latitude to a location closer to the equator.
In
Impulse Davy, who has been working for the US government, is captured by a secret organization who learns to control him. During tests, a researcher has Davy jump into a sealed container, but the air pressure does not increase. It is not until the researcher has Davy jump back and forth between foot tubs—one with water, one without—that he confirms something Davy has known since the first novel. His talent opens a gateway between points, and he "slides through." (So, air pressure was equalizing through the hole, and water was running downhill into the empty tub.) Although Davy's own jumping between altitudes would make his ears pop.
In later novels we learn more, as first Davy's wife Millie learns the skill after countless jumps with her husband, and then their daughter discovers how to do it, too. The daughter, Cent (short for Millicent, after her mother), really goes to town with "impulsing"—adding momentum by "jumping in place." She ends up flying like Superman, and reaching some incredible destinations after acquiring a "spacesuit."
The books explore a number of other applications of "jumping." But I don't want to spill too much for anyone who has not read the books.