Exactly so. TOS was a lot of things besides a story about a spaceship.The whole point of Star Trek was that you could tell any kind of story you want, and bring it into the Star Trek universe. If it's a story worth telling, find a way to tell it.
If the choice is between a great story and canon, canon should be thrown overboard without hesitation. The frequent insistence on doing the opposite is one big reason that after 50 years Trek is so empty and uninteresting.
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