I dont know if they can do something crazy, by making a mini when the ship falls into a black hole and that is the ending of Star Trek Continues, but the following week a new series starts, one devoid of Star Trek IP, it starts with a ship coming out of a black hole, with no idea who they are, and no idea everything around them has changed, officially its the story of a crew exploring a new universe with no idea who they are, becoming new people based on their new experiences, its just got the same cast as Continues had, and if some conspiracy nuts wanted to whisper it, this new series is actually a sequel to Continues.
The other crazy option, is that the Stark Trek Continues was never actually Star Trek, they just found themselves in the Trek universe for some reason knowing they had to play those roles, and now they are returned to their universe, they can be themselves again.