I'd been prepared for the complete alt-universe take on the Kelvin timeline in these, and I knew that a fair number of them had been written before Into Darkness was even scripted, so I wasn't expecting them to mesh perfectly with either the pre-Kelvin split or the subsequent film, but I was a little surprised to find they weren't even
internally consistent--the I, Enterprise flashback storyline is dropped in between the events of After Darkness and Into Darkness, with no mention of the Nibiru mission assigned in both AD and the Star Trek 2013 video game, and includes Carol Marcus, who won't join the Enterprise crew until after STID.