In s7, "Author, Author," it had not been shared with the Alpha Quadrant at that point, Paris asks the Doctor if the Doctor could help him get Captain Proton published at one point in the episode. But I'm sure the average viewer will overlook it. But checking Memory Alpha suggests that Paris may have based it off of a movie, as apparently Bride Of Chaotica! was in the NX-01 Enterprise's computer in Cogenitor. But this could have been the graphics team putting an Easter egg in the graphics too.
A phoneme in animation terms is the shape for each type of sounds used to form speech. This picture I used as reference when I experimented with 2D animation in flash.
Your phoneme shapes look good but the animation kind of looks rather choppy from one phoneme to the other. Again, nothing wrong with it all part of the learning curve. In flash you can sometimes use tweening to help the transition between phonemes, for others you can use the onion tool (which you can use to show previous frames transparent on the current one for reference) and do frame by frame adjustments
I forget, what program are you using for the animation again? I could perhaps find some learning material to help!
I used a program called papagayo to help determine what animation shapes to use at what point of dialog. There is a fully automated program called Crazy Talk, but I never was able to get it to integrate properly into flash so gave up. If you are using After-Effects there is a Auto-Lipsync Script out there, but it costs 40 bucks per license, and I am not sure how it works...
In college I originally was going to go to school for Animation, but instead settled on IT with a certificate in Film / Digital arts. My final year I took a year long course the first focused on character design, and then the final semester we had to create a 5 minute animation using those characters. While everyone in the course did claymation, stop-motion, or hand drawn cell animation, I chose to do it all by computer, using Adobe Illustrator and Flash. Turned out pretty well and was featured in a local student animation festival, but I could probably do better today. But yeah lip-syncing and the animation to go with it, is definitely the most challenging part of 2d animation.