Assuming the movies will still be based on the NuTrek-verse, what should be done with Khan? Just keep him on ice permanently? bTW, it's too bad that Khan in STiD was really Khan, and not Joachim who proclaimed himself as Khan, thinking that Noonian Singh was murdered by Adm. Marcus (and after credits scene would have fixed all this, with the camera panning from a slipping Khan to a tube with the name "Singh, Noonian" stenciled on it, before fading to black.
Personally, I think having NuKhan would have worked if the set-up was better (i.e. have a villain in the second NuTrek film, maybe Captain Garth of Izar, before it is revealed that the head of Section 31 was the real Khan Noonian Singh, who managed to take over S31, and is slowly subverting the Federation from the inside out) This would explain the more militarized look of Starfleet. But, I digress...
Personally, I think having NuKhan would have worked if the set-up was better (i.e. have a villain in the second NuTrek film, maybe Captain Garth of Izar, before it is revealed that the head of Section 31 was the real Khan Noonian Singh, who managed to take over S31, and is slowly subverting the Federation from the inside out) This would explain the more militarized look of Starfleet. But, I digress...