You can wire it in the computer so that it would be impossible to disable without disabling the whole ship, not to mention that starfleet regulations could include instructions about leaving this system on. The same way it is illegal to tamper with your odometer even though you technically own it along with the car.Unless the communication officer disables the system.One would think that a ship empty of people would automatically send a coded distress signal to all the starfleet ships it can reach. To warn them, you know, that something is not quite right.
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