The thing is, 100% of the ship's structure was altered in shape and dimensions, which is very different from inserting new hull sections or superstructures into oil tankers. It's more akin to making the tanker two inches narrower than before overall - a staggeringly massive engineering project that is in no way comparable to the insertion of hull plugs or, say, the conversion of the ship into a floating casino or an aircraft carrier, or some other such near-trivial undertaking.The refit of the 1701 isn't even that bothersome spaceframe wise.
Timo Saloniemi
There have been ships that have been cut in half horizontally, the upper halve raised and an entire new build section inserted inbetween the two halves so the hull would be deeper, IIRC it was a great lake freighter, can't remember the name of the ship, also a Spanish steam passenger ship ended up being rebuild into a flat hulled barge without superstructure whatsoever, and there have been plenty of battleships around that have been refitted far more extensively, heck some even became aircraft carriers.
As for the 1701, extending the saucer section isnt a biggie, only a new ring was fitted, deck hight and number of decks didn't change, fitting a new bridge probably wasn't all that difficult either, the changes made to the secundairy hull were more extensive but not such that you had to build a new hull either, a new neck and nacelle pylons were probably fitted though.
Fitting a new powerplant is done quite often to ships, some battleships even changed from a 4 prop plant to a two prop plant with the replacement of all boilers and turbines to boot, I guess it all depends on what the owner wants with the ship.