I mostly agree with what has already been said for the best episodes though my favourite episodes are not always the best ones. I enjoyed Dark Frontier and Macrocosm for action Janeway, not the best episodes but Janeway was just so cool in them. Body and Soul was probably my favourite funny episode.
I agree with all that.
The ones I'd vote for, though, to stand up against the best of TNG and DS9 would be:
Equinox
Scorpion
Tuvix (despite the stupid aspects of how the merging took place)
In that order.
And possibly Year of Hell. Not a deep idea show, but a good character study for the captain. IMHO, as good as The Inner Light, only in a different way. But nowhere near as good as In The Pale Moonlight.
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