I know Voyager has a pretty bad rep, which is often times well deserved. But it did have a lot of potential. It's really sad it couldn't have been something awesome.
This is my idea for a Voyager redemptive relaunch. Instead of showing the adventures of Voyager in the Alpha Quadrant, my idea is to get Voyager back out in the Delta quadrant and have it portrayed the way we all hoped it would have been.
Back in the Delta Quadrant Voyager is landed on an asteroid-like planet undergoing extensive repair. They've would have been there for about a year; but the ship would triumphantly relaunch during the season premier. Voyager is now with two other ships. Chakotay has taken command of a derelict ship they found. And since Voyager can no longer haul around the Baxial, Nelix is in command with a small crew.
Chakotay authorized to take command of his own vessel? What makes you (and books writers like Meyer) think that he would get his commission of Lieutenant Commander back or better, would be promoted Capitain, after the return of Voyager on Earth? I mean, this guy has resigned from Starfleet to join the Maquis, an organization considered by the Federation of Planets as criminal (besides, is it not to capture him and to get Tuvok back that Janeway had left for hunting?!).
Plus, I don't remember that the exchanged communiqués between Voyager and Starfleet, further to "A message in the bottle", let us think by no means that a general amnisty had been considered or even, pronounced toward Chakotay and Cie from ValJean. In fact, he would rather be lucky not to join his friends who were imprisoned after the fall of the Maquis. Of course, for service provided aboard Voyager and thaks to Janeway's support, his punishment would be reduced but no, I don't see neither Starfleet or the Federation drawing completely a line under his past actions in the Maquis, even if violent conflicts occured.
By cons, I can see Chakotay turning later, after a short imprisonment, in teaching in a non militay academy... before serving again for another sub-group considered as criminal or something like that...
And what about Seven? You didn't quote her. Where do you see? Working with the Doctor and Icheb on a project or still experiencing a life on Earth?