Four things...
1) Remember in the movie, First Contact, when Pichard shows Lilly earth from Enterprise? He commented that there is nothing between the ship and space other than the force field, which comprised the window...So, no need for "Transparent" anything.
2) "Transparent Aluminum" is one of the reasons I don't care for the movie The Voyage Home. They didn't have to have clear walls for the whales...Standard bulkheads would have done just fine...They needed the transparency because it was a movie, and needed to show the whales inside the ship.
3) When you make anything "Transparent", it has to be thicker than say, just sheet metal, because it's inherently not as "Impact Resistant". But then again, you can't see through sheet metal...So, we're back to something strong, yet see-through...
4) I used to be what was called a "Lexan Product Manager" for a national chain (About 350 locations) of "Plastic, Rod, Sheet and Tube" distributors. "Lexan" as many of you may know, is General Electric's version of "Polycarbonate" sheet. You can literally hit an 1/8 inch thick sheet of polycarbonate with a sledgehammer, and not do any damage. Polycarbonate is 25 times stronger than acrylic, or using the brand name, Plexiglass. This is because polycarbonate is much softer than acrylic...Which, makes it more forgiving to brunt-trauma (But also created the problem with cleaning the polycarbonate...As many of you already know, but never really thought about it, you can clean glass with a paper-towel all day long and never scuff it up...But if you clean acrylic with paper towel over and over, you will eventually create "Mars" in the acrylic, resulting in a cloudy appearance...And with polycarbonate, you can create these mars with far fewer cleanings, because it is so soft...As a matter of fact, the instructions call for using "Soapy water and a new, cloth towel, to lightly clean polycarbonate (Thus resulting in longer life for the window.) Also, G.E. manufactures a product called "Mar-Guard"...Polycarbonate, as strong as standard polycarbonate, but with a coating that is very hard (And clear, of course), which makes for a better choice in a high-cleaning window area...But at a stiff price too...If memory serves, about 3-4 times the cost of standard polycarbonate, 6-8 times the price of standard acrylic and 10-15 times the cost of standard class. But, for instance, in a prison setting, the extra cost pays for itself with less break-outs, or much less important, less vandalism by the inmates.
Now...There are many different applications for polycarbonate, where the end-user is happy to give-up cleaning ability for safety...For instance, we had a large customer who made tool cleansing units. If they used glass, or even acrylic, shards would spin-off of the tools and bust the glass or acrylic very quickly over it's use-life. So, we got them to use Lexan (Polycarbonate) and in this case, Mar-Guard. And, to take the example to an extreme, they "Cold-Formed" the Mar-Guard (Take a sheet of 3/8 thick and put it in a press, and "Cold-Form" bends instead of trying to glue edges together in the cleansing equipment...Something that was not encouraged by G.E. as many of you may guess, because the hard coating of the "Mar-Guard" would crack over time. (More on that in a moment) but, this was worth the risk/changing of the clear guards in the field, as was proven over years and years of using the polycarbonate with the hard, Mar-Guard finish and the customer finding that it was still cost-effective...Less changes in the field...Simple as that.
Now, all of the above polycarbonate examples I've listed concerns simple, different thicknesses of polycarbonate sheet...From films (Which you still could not tear with your bear hands) down to 10 mils, all the way up to sheet that is 1/2 inch thick. Differing thicknesses needed for differing applications. When I said above, that you could not break 1/8 inch thick polycarbonate with a sledge-hammer, I meant it...But, if you use a pick, you can eventually create a "Tear" in the polycarbonate sheet and eventually break through that sheet of polycarbonate (Or, use a pair of scissors to start a cut in film, and then easily tear that film the rest of the way). This is because polycarbonate is "Notch Sensitive"...Meaning: Once a notch is created in any thickness of polycarbonate, a breach, or hole, will appear, in that specific spot, after constant bashing with a heavy pick...Or, like I already said, start a cut in polycarbonate film with scissors and then easily tear it the rest of the way...So...
G.E. came up with the idea of laminating sheets of polycarbonate together to create strength...Both against physical abuse and in the use for bullet-resistant windows. Because, it's relatively easy to create one notch in a polycarbonate sheet, but if you had 3 sheets, lamninated together, to equate a 3/8 inch sheet, it was untold times more strong than one sheet of 3/8 inch thick polycarbonate...So much so, that...
I've got one of my old business cards, which were made from 10 mil Lexan film...Which made for easy presentations of the strength of polycarbonate...Just hand your business card to a customer and ask him or her to try to tear it, bare handed...As I am sure you've guessed, they could not tear it...Thus, a handy way to teach a customer about Lexan...But, I would then teach the customer about Lexan being "Notch Sensitive" by cutting my business card just a bit, and then letting the customer tear the business card in half, at that "Notch Point" very easily (And please note...This job was a good 15 years ago, and my info may be a bit dated)...This business card of mine is encased in a 1 1/4 thick sheet of laminated polycarbonate...5 layers thick...The inside and outside of the laminated sheet being 1/8 inch thick, with a "Mar-Guard" coating...Then two sheets of 3/8 inch thick, and one sheet of 1/4 inch thick...Making the total thickness of 1 1/4 inch. They did this, again, because polycarbonate is "Notch Sensitive"...Meaning, if a bullet hit a sheet of 1 1/4 inch thick standard polycarbonate, once that bullet got through the surface, it then traveled quite easily through the entire 1 1/4 inch thick sheet...But by laminating it, the bullet now has to break through 5 layers...So...Again, this piece of 1 1/4 inch thick polycarbonate, with my business card in the middle, was shot with a 44 magnum pistol from 15 feet. The bullet, literally looking like a marshmallow inside Jello. Yes, it went through the first 1/8 inch thick piece of polycarbonate, but stopped in the middle...Literally, leaving the other side absolutely flat, because the layers of polycarbonate stopped the bullet. A pretty cool example of the strength of Lexan, I am sure you'll agree?
We used to go to prisons and put on displays. We'd have the officers shoot our differing thickness of laminated Lexan, just to prove to them how tough it was by stopping their bullets cold...We would also line-up the inmates, with a pick, and tell them to "Have at it, passing off the pick to the next inmate when you get tired of swinging it", and offering a carton of cigarettes to the first inmate to bust through the sheet...For these applications, we'd use a 3 laminate, 3/8 inch thick sheet, to lower the cost because it would be inside a prison where guns are not allowed, but inmates abuse the windows, as they abuse everything (And differing thicknesses, laminated or not, had different "Safety Ratings" based on the minimum amount of time, as guaranteed by General Electric, it would take to bust through the window with any tools short of power saws and whatnot). The same prison would use 1 1/4 inch thick Lexan, called "Lexguard" for windows in guard towers where gun-fire might come into play...
The same 1 1/4 inch thick, 5-laminate Lexan is also used by lots of convenience stores, because if it can stop a 44 Magnum round, a 44 Magnum being the most powerful of all handguns, it will stop shots from any hand gun...Where the bullets could fly straight through thick glass or acrylic or even thick polycarbonate, when it's not laminated. (The same thing can be achieved by laminating anything to create differing thicknesses, with differing totals of sheets that make up the substrate...In other words, "Notch Sensitive" is universal in all products.)
So...After this long-winded post on what I am sure is WAY more information than you ever needed about, from weakest to strongest, glass, acrylic, polycarbonate and sheet metal...I'll just say "Transparent Aluminum" is a bit of an oxymoron. All it needed to be was, like I already stated, preferably a standard bulk-head, and if they just HAD to have something see-through, just laminate it X amount of times to get Y amount of strength..."Six inch thick transparent aluminum", as I think I remember the thickness being in the movie, could be reduced to say, 2 inches thick if you laminate it ("Transparent Aluminum", or polycarbonate)...Down to say, a 3/8 inch thick, non-transparent, bulkhead...Made out of something a LOT more strong than sheet metal in Trekdom, of course.