Okay, the Pike dialogue cinches it. (Those screencaps don't, because they would have been in reference to the putative second starship, the one potentially in California.)
It's a bit annoying that the dedication plaque of this new ship still says "San Francisco" when there's no need for it to say that any more. But the interpretation of "San Francisco Yards" as an organization ultimately unrelated to the city of San Francisco is a valid one. Perhaps the yards are even named after the saint, not the city at all?
Timo Saloniemi
It's a bit annoying that the dedication plaque of this new ship still says "San Francisco" when there's no need for it to say that any more. But the interpretation of "San Francisco Yards" as an organization ultimately unrelated to the city of San Francisco is a valid one. Perhaps the yards are even named after the saint, not the city at all?
Timo Saloniemi