The abandonment depicted in "CALYPSO" could have been one of the various alternate timelines Burnham's mother spoke about. Remember Zora stated they hid the ship in that Nebula/Anomaly and everyone was ordered to abandon it. They may have even attempted to destroy in but failed; and went through another method of delaying 'Control'; which obviously worked as there are still lifeforms in the Galaxy.So if Discovery is now in year 3189 (2259+930) and Calypso takes place 1000 year after Discovery is abandoned, we could be looking at year 4189 (42nd century!) for the Short Trek timeline! That's of course assuming no more time travel shenanigans. Interesting..
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