The new Ghostbusters game had some good scares, mostly in the Library. The bit with the children's section was particularly creepy.
Mind you I think it's best to distinguish a jack-in-the-box/BOO! moment from a genuine scare. For starters a genuine scare requires atmosphere and a slow build up, it should get you jumping at shadows when there's really nothing there or have you feel like you're really running for you life and shouldn't depend on facehuggers or headcrabs or whatever unexpectedly jumping at the screen.
Mind you I think it's best to distinguish a jack-in-the-box/BOO! moment from a genuine scare. For starters a genuine scare requires atmosphere and a slow build up, it should get you jumping at shadows when there's really nothing there or have you feel like you're really running for you life and shouldn't depend on facehuggers or headcrabs or whatever unexpectedly jumping at the screen.