See, I'm not sure Trek's soul has been ripped out. For me, the soul of the franchise is intact in both of the new movies, it's only the presentation (ie, the superficial trappings, the surface layer) which has changed in any significant way. At their heart, both movies still feel like Star Trek to me, absolutely.
I think you've summed it up nicely there, the way 09 was written with the branching timeline has made a lot of people complain, but it is also pure Star Trek in my opinion.
Absolutely Right.™