Many interesting points made
Ok, so the "humanitary" explanation about not beaming them up seems plausible to me, even if I don't see Reed having such consideration for the monks. Archer, T'Pol - yes, sure, but they couldn't communicate with Enterprise. Thinking about it: why didn't they try to beam down a communicator, like in "Detained"?
I still think Archer getting the second beating in order to throw confirm their suspictions about the holes Trip saw in catacombs was plainly stupid, though
But thinking more about the episodes, there other holes - not "plot holes", but rather "story holes".
What was a bitt silly imo is that the Vulcans had that huge secret spy array in their cellar, but
- They can't detect the Andorians in orbit?
They may very well have detected the Andorians. The monks told Archer that the Andorians stop by every once in a while to search the monastery. If the Vulcans had acted on detection of the Andorians it would have confirmed their suspicions.
A huge sensor array hidden below a monastery (how many people are working there, btw?) with just ONE entrance hidden behind a curtain? Sorry, I cannot buy it. And all those people were just continuing their work unperturbated, while monks had been taken hostage and almost killed? I can understand they didn't react at once, because they probably hoped Andorians would be gone after yet another inutile raid, but when the situation got critical, they still made no attempt to help prisoners?
Still, for all its faults, Andorian Incident is one of my favourites.
